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Fix issue with Silva having domain and superkingdom taxonomic ranks both converted to superkingdom (D) in Kraken #745

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Thomas-Bcp
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Addressing issue #739.
superkingdom is converted to major_clade.
domain is still converted to superkingdom.
This avoids having the same taxonomic rank (D) apprearing twice in the classification on Kraken reports.

…oth converted to superkingdom (D) in Kraken

Addressing issue DerrickWood#739.
"superkingdom" is converted to "major_clade".
"domain" is still converted to "superkingdom".
This avoids having the same taxonomic rank (D) apprearing twice in the classification on Kraken reports.
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